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Fix documentation link
This PR corrects a link found in two of the bwa modules meta.yml file. They did incorrectly point to a samtools website.
PR checklist
- [x] This comment contains a description of changes (with reason).
- [x] If you've fixed a bug or added code that should be tested, add tests!
- [x] If you've added a new tool - have you followed the module conventions in the contribution docs
- [x] If necessary, include test data in your PR.
- [x] Remove all TODO statements.
- [x] Emit the
versions.ymlfile. - [x] Follow the naming conventions.
- [x] Follow the parameters requirements.
- [x] Follow the input/output options guidelines.
- [x] Add a resource
label - [x] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- [x]
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware - [x]
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware - [x]
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [x]
I'm not sure how to proceed with these tests which are failing. Any input @mashehu ?
the conda ones are probably okay to ignore, the sha sum is often not reproducible with conda. Can you try to update the ones for sapme? I know you didn't touch the code itself, but it's always good if we try to fix the tests when they somehow start failing