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New module: tiledbvcf
PR checklist
Closes #XXX
- [x] This comment contains a description of changes (with reason).
- [x] If you've fixed a bug or added code that should be tested, add tests!
- [x] If you've added a new tool - have you followed the module conventions in the contribution docs
- [x] If necessary, include test data in your PR.
- [x] Remove all TODO statements.
- [x] Emit the
versions.yml
file. - [x] Follow the naming conventions.
- [x] Follow the parameters requirements.
- [x] Follow the input/output options guidelines.
- [x] Add a resource
label
- [ ] Use BioConda and BioContainers if possible to fulfil software requirements.
- Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
- [ ]
PROFILE=docker pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ ]
PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ ]
PROFILE=conda pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware
- [ ]
Two modules: TileDB VCF create and TileDB VCF store. Pending tasks:
- [ ] handle absence of singularity container and bioconda recipe
- [ ] handle "- Empty file found!" when running tests in tiledbvcf_create. This is the expected behaviour as we are creating an empty datastore.