Add module Emboss/getorf

[timslittle]

PR checklist

Closes #2663

• [x] This comment contains a description of changes (with reason).
• [x] If you've added a new tool - have you followed the module conventions in the contribution docs
• [ ] Remove all TODO statements.
• [x] Emit the versions.yml file.
• [x] Follow the naming conventions.
• [x] Follow the parameters requirements.
• [x] Follow the input/output options guidelines.
• [x] Add a resource label
• [x] Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • [x] PROFILE=singularity pytest --tag <MODULE> --symlink --keep-workflow-wd --git-aware

[SPPearce]

Hi @timslittle , I'm going through the open PRs and trying to get them finished off. I see this has been hanging around for a year and a half without anyone looking at it 😱 . Do you want help to get this finished off?

[SPPearce]

What are the possibilities for out_ext?

[SPPearce]

Hi @timslittle , Are you still interested in getting this module merged in? It will need converting to the more recent specifications that are being used in the modules repo, which may include:

• using nf-test instead of pytest
• conda definition in a environment.yml file separate from the main.nf
• adding a stub
• updating the meta.yml file to reflect the latest specification (better reflecting the channel output rather than a flat list)

If you need help we can provide that, but if you aren't going to work on it in the near future then we will close this PR (it can be reopened in the future if someone wants to work on it again).

PR will be closed next week if no further update is made.