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new module: atlas-gene-annotation-manipulation/gtf2featureAnnotation

Open pinin4fjords opened this issue 2 years ago • 1 comments

Is there an existing module for this?

  • [X] I have searched for the existing module

Is there an open PR for this?

  • [X] I have searched for existing PRs

Is there an open issue for this?

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Are you going to work on this?

  • [X] If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module

pinin4fjords avatar Oct 10 '22 18:10 pinin4fjords

This script converts a GTF file to a tabular list feature-wise annotation in a highly configurable manner (different feature types, attributes etc).

I've asked on #modules if such a thing already exists in nf-core, but if not I would find this very useful to assist in the interpretation of gene expression data etc.

There is already a Conda package and Biocontainer which should make the module quite easy to develop.

pinin4fjords avatar Oct 10 '22 18:10 pinin4fjords

Duplicate of #2316

muffato avatar Jan 20 '23 19:01 muffato