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Port rnaseq subworkflows to nf-core/modules
Please convert each of this as an issue when you start working on one.
(That can be done by clicking on the circle dot ⊙
at the end of the line in the list below, hover on a list item to see it)
And label it with the appropriate pipeline label (ie :rnaseq
).
Note that a subworkflow can be useful for several pipelines.
- [x] #2264
- [x] #2180 rename to
bam_sort_stats_samtools
@KamilMaliszArdigen - [x] new subworkflow bam_stats_samtools @drpatelh
- [x] #2194 rename to
bedgraph_bedclip_bedgraphtobigwig
@KamilMaliszArdigen - [x] #2224 rename to
bam_dedup_stats_samtools_umitools
@KamilMaliszArdigen - [x] #2253 @KamilMaliszArdigen
- [x] #2168 @dmarron
- [x] new subworkflow rseqc
bam_rseqc
@drpatelh
@maxulysse am I right in thinking that much of this is done now?
I'm a novice, but I'm seeing e.g. https://github.com/nf-core/modules/blob/master/subworkflows/nf-core/bam_stats_samtools/main.nf already as of quite recently.
Is this all complete and the issue can be closed?