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new module: deseq2/differential

Open pinin4fjords opened this issue 3 years ago • 0 comments

See https://nfcore.slack.com/archives/CE8SSJV3N/p1664996414210659?thread_ts=1661174347.177469&cid=CE8SSJV3N

Wrapper module for differential analysis with DESeq. I have my own version, and @ggabernet flagged her existing pipeline at https://github.com/qbic-pipelines/rnadeseq.

Suggest keeping differential analysis distinct from plotting, to allow reuse of the latter and facilitate software dependency management per process.

pinin4fjords avatar Oct 06 '22 10:10 pinin4fjords