Port local OpenMS modules to nf-core modules

[jonasscheid]

Description of feature

We should make sure to share as much modules as possible with other nf-core repositories using these tools. E.g. https://github.com/nf-core/quantms/issues/63

This issue tracks the progress of modules ported to the nf-core modules repository. Feel free to add more modules 🥳

### Tasks
- [ ] https://github.com/nf-core/modules/issues/3990
- [ ] https://github.com/nf-core/modules/issues/3991
- [ ] https://github.com/nf-core/modules/issues/3992
- [ ] https://github.com/nf-core/modules/issues/3993
- [ ] https://github.com/nf-core/modules/issues/4640
- [ ] https://github.com/nf-core/modules/issues/4641
- [ ] https://github.com/nf-core/modules/issues/3105
- [ ] https://github.com/nf-core/modules/issues/4698
- [ ] https://github.com/nf-core/modules/issues/4642