Replace DeepLC and MS2PIP wrappers with MS2Rescore

[jonasscheid]

Description of feature

Since the reader and writer in MS2Rescore are based on psm_utils and psm_utils is now capable of reading and writing idXML files, we should replace it with DeepLC and MS2PIP wrappers.

The tool is a framework for peptide property predictions that can be used for rescoring and it comes with a very handy rescoring report when mokapot is specified as rescoring engine (We should consider that or give the option to run mokapot or percolator). Also novel feature generators like ionmob can easily be used when ion mobility data is processed.