Refactor kit processing to be maintainable

Open edmundmiller opened this issue 2 years ago • 1 comments

@FelixKrueger we should make a json or yaml or csv or something of the table linked above, and then parse it either in the methylseq pipeline, or get it baked right into trimgalore, so we could do trimgalore --em-seq...

Not sure how that'll ever fix our schema being out of sync issue, though.

Originally posted by @Emiller88 in https://github.com/nf-core/methylseq/pull/335#pullrequestreview-1596219918

Aug 25 '23 17:08 edmundmiller

still needs to be done ?

Sep 23 '24 07:09 sateeshperi