22.03.0-edge breaks pipeline

[edmundmiller]

Check Documentation

I have checked the following places for your error:

• [X] nf-core website: troubleshooting
• [X] nf-core/methylseq pipeline documentation

Description of the bug

When running on the latest edge release, the pipeline fails to start because into is deprecated. This may be an upstream issue as well, that it's fully deprecated, and it's removed. Just wanted to make this issue though so in case anyone else runs into it.

Steps to reproduce

Steps to reproduce the behaviour:

1. Command line:

NXF_VER=22.03.0-edge NXF_DEFAULT_DSL=1 nextflow run nf-core/methylseq -profile test,docker

2. See error:

N E X T F L O W  ~  version 22.03.0-edge
Launching `https://github.com/nf-core/methylseq` [exotic_leakey] DSL2 - revision: 03972a686b [master]


------------------------------------------------------
                                        ,--./,-.
        ___     __   __   __   ___     /,-._.--~'
  |\ | |__  __ /  ` /  \ |__) |__         }  {
  | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                        `._,._,'
  nf-core/methylseq v1.6.1
------------------------------------------------------

Operator `into` is deprecated -- it will be removed in a future release

 -- Check script '/home/edmundmiller/.nextflow/assets/nf-core/methylseq/main.nf' at line: 45 or see '.nextflow.log' file for more details

Expected behaviour

22.02.0-edge works fine.

NXF_VER=22.02.0-edge nextflow run nf-core/methylseq -profile test,docker

Log files

Have you provided the following extra information/files:

• [X] The command used to run the pipeline
• [X] The .nextflow.log file .nextflow.log

System

• Hardware: Desktop
• Executor: local
• OS: Ubuntu
• Version 20.04

Nextflow Installation

• Version: 22.03.0-edge

Container engine

• Engine: docker
• version:
• Image tag: nfcore/methylseq:1.6.1

Additional context

@pditommaso Just making sure this expected behavior.