nf-core
Find CI test dataset for binner "COMEBin" & "MetaBinner"
Description of feature
COMEBin
Binner COMEBin was added in https://github.com/nf-core/mag/pull/875 but is currently not activated in any test profile. This is because it appears to require larger datasets to function. With -profile test_full it does function though.
As a note, ext.args = "-b 20" (default 1000) helps with test data, as in https://github.com/ziyewang/COMEBin/issues/4. However, the binner fails later after: "[CheckM - analyze] Identifying marker genes in bins.", so it doesnt make it work all the way through.
Additionally, GPU optimization might be beneficial for runtimes (which seem at this point quite high!). See also https://github.com/nf-core/mag/issues/936.
MetaBinner
Binner MetaBinner was added in https://github.com/nf-core/mag/pull/881 but is currently not activated in any test profile.
This is because it appears to require larger datasets to function. It also fails with -profile test_full. nf-core/bacass's dataset for test_full works with co-assembly as described in https://github.com/nf-core/mag/pull/881 (but COMEBin fails!).
