nf-core
Transcript annotation with gene names
Description of feature
First, thanks for sharing this wonderful resource!
While the pipeline did not produce any major errors (though it appeared it was using more memory than assigned using parameters), it seems that GSTAMA did not annotate with actual gene names or other easily interpretable metrics (e.g. exons). It would be great if you could include in the pipeline additional modules to do that or at least suggest steps for post-processing the pipelines output to do so. For example, would you recommend to proceed with 'pigeon classify' and 'pigeon filter' from iso-seq or other alternatives? Advice towards final isoform visualization would be also highly appreciated
Thank you again, Asta
@astulaaa , sorry this didn't get any attention, do you think this is still an issue in today's version?
