hic
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Published
20 hours ago •
nf-core
nf-core
Reopening the split-fastq error
Description of the bug
Reference to this: https://github.com/nf-core/hic/issues/71
Hello ! Reopening this issue . I'm using nf-core/hic v2.1.0-gfe4ac65 on our HPC and when i use this setting , the pipeline does not proceed to the fastqc step. No errors or anything. Just silent. In addition to saying "split-fastq: true" in my YAML file, should i be adding any more parameters ?
Command used
nextflow run nf-core/hic -c nextflow.config -profile biowulf -params-file params1.yaml -resume
YAML file
input: 'sample1.csv'
outdir: './TDMSO_trim/'
genome: 'GRCh38'
digestion: 'arima'
save_interaction_bam: true
hicpro_maps: true
split_fastq: true
Command used and terminal output
slurm log
[+] Loading java 17.0.3.1 ...
[+] Loading singularity 4.0.1 on cn0847
[+] Loading nextflow 23.10.0
[33mNextflow 23.10.1 is available - Please consider updating your version to it�(B�[m
N E X T F L O W ~ version 23.10.0
Launching `https://github.com/nf-core/hic` [nice_perlman] DSL2 - revision: fe4ac65631 [master]
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,--./,-.
___ __ __ __ ___ /,-._.--~'
|\ | |__ __ / ` / \ |__) |__ } {
| \| | \__, \__/ | \ |___ \`-._,-`-,
`._,._,'
nf-core/hic v2.1.0-gfe4ac65
------------------------------------------------------
Core Nextflow options
revision : master
runName : nice_perlman
containerEngine : singularity
launchDir : /vf/users/03_nextflow_hic
workDir : /vf/users/03_nextflow_hic/work
projectDir : /home/user1/.nextflow/23.10.0/assets/nf-core/hic
userName : user1
profile : biowulf
configFiles : /home/user1/.nextflow/23.10.0/assets/nf-core/hic/nextflow.config, /vf/users/03_nextflow_hic/nextflow.config, /vf/users/03_nextflow_hic/nextflow.config
Input/output options
input : /data/03_nextflow_hic/sample1.csv
outdir : ./TDMSO_trim/
Reference genome options
genome : GRCh38
fasta : /fdb/igenomes//Homo_sapiens/NCBI/GRCh38/Sequence/WholeGenomeFasta/genome.fa
igenomes_base : /fdb/igenomes_nf/
bwt2_index : /fdb/igenomes//Homo_sapiens/NCBI/GRCh38/Sequence/Bowtie2Index/
Digestion Hi-C
digestion : arima
DNAse Hi-C
min_cis_dist : 0
Alignments
bwt2_opts_end2end : --very-sensitive -L 30 --score-min L,-0.6,-0.2 --end-to-end --reorder
bwt2_opts_trimmed : --very-sensitive -L 20 --score-min L,-0.6,-0.2 --end-to-end --reorder
Valid Pairs Detection
max_insert_size : 0
min_insert_size : 0
max_restriction_fragment_size: 0
min_restriction_fragment_size: 0
save_interaction_bam : true
Contact maps
bin_size : 1000000
hicpro_maps : true
ice_filter_high_count_perc : 0
res_zoomify : null
Downstream Analysis
res_dist_decay : 250000
tads_caller : insulation
res_tads : 40000
Institutional config options
config_profile_description : Biowulf nf-core config
config_profile_contact : [email protected]
config_profile_url : https://hpc.nih.gov/apps/nextflow.html
Max job request options
max_cpus : 32
max_memory : 400 GB
max_time : 240 h
!! Only displaying parameters that differ from the pipeline defaults !!
------------------------------------------------------
If you use nf-core/hic for your analysis please cite:
* The pipeline
https://doi.org/10.5281/zenodo.2669513
* The nf-core framework
https://doi.org/10.1038/s41587-020-0439-x
* Software dependencies
https://github.com/nf-core/hic/blob/master/CITATIONS.md
------------------------------------------------------
WARN: Found unexpected parameters:
* --clusterOptions: null
- Ignore this warning: params.schema_ignore_params = "clusterOptions"
[- ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[- ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:FASTQC -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:FASTQC -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[- ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:FASTQC -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:INPUT_CHECK:... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:PREPARE_GENO... -
[- ] process > NFCORE_HIC:HIC:FASTQC -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[- ] process > NFCORE_HIC:HIC:FASTQC -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[- ] process > NFCORE_HIC:HIC:FASTQC [ 0%] 0 of 1
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... [ 0%] 0 of 2
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[- ] process > NFCORE_HIC:HIC:FASTQC [ 0%] 0 of 1
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... [ 0%] 0 of 2
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]
executor > slurm (1)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[- ] process > NFCORE_HIC:HIC:FASTQC [ 0%] 0 of 1
[e7/0a8c55] process > NFCORE_HIC:HIC:HICPRO:HICPR... [ 0%] 0 of 2
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]
executor > slurm (2)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f4/e422b9] process > NFCORE_HIC:HIC:FASTQC (TDMSO) [ 0%] 0 of 1
[e7/0a8c55] process > NFCORE_HIC:HIC:HICPRO:HICPR... [ 0%] 0 of 2
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]
executor > slurm (3)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f4/e422b9] process > NFCORE_HIC:HIC:FASTQC (TDMSO) [ 0%] 0 of 1
[b6/d18468] process > NFCORE_HIC:HIC:HICPRO:HICPR... [ 0%] 0 of 2
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
[[id:TDMSO, single_end:false, chunk:0], [/data/01_with_trimming_real/out_trim/TDMSO_trim.R1.fastq.gz, /data/01_with_trimming_real/out_trim/TDMSO_trim.R2.fastq.gz]]
executor > slurm (3)
[a3/049d16] process > NFCORE_HIC:HIC:INPUT_CHECK:... [100%] 1 of 1, cached: 1 ✔
[69/8eacd4] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f8/131384] process > NFCORE_HIC:HIC:PREPARE_GENO... [100%] 1 of 1, cached: 1 ✔
[f4/e422b9] process > NFCORE_HIC:HIC:FASTQC (TDMSO) [ 0%] 0 of 1
[b6/d18468] process > NFCORE_HIC:HIC:HICPRO:HICPR... [ 0%] 0 of 2
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:GET_V... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:MERGE... -
[- ] process > NFCORE_HIC:HIC:HICPRO:HICPR... -
[- ] process > NFCORE_HIC:HIC:HICPRO:BUILD... -
[- ] process > NFCORE_HIC:HIC:HICPRO:ICE_N... -
[6a/3e758f] process > NFCORE_HIC:HIC:COOLER:COOLE... [100%] 3 of 3, cached: 3 ✔
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:COOLE... -
[- ] process > NFCORE_HIC:HIC:COOLER:SPLIT... -
[- ] process > NFCORE_HIC:HIC:HIC_PLOT_DIS... -
[- ] process > NFCORE_HIC:HIC:COMPARTMENTS... -
[- ] process > NFCORE_HIC:HIC:TADS:COOLTOO... -
[- ] process > NFCORE_HIC:HIC:CUSTOM_DUMPS... -
[- ] process > NFCORE_HIC:HIC:MULTIQC -
### Relevant files
_No response_
### System information
_No response_
