Edit distance plots for mapped reads

Open marcel-keller opened this issue 1 year ago • 1 comments

Dear nf-core/eager team,

For the the next version of eager, it would be great if there would be an option to generate edit distance plots for mapped reads (at least for procaryotic genomes). As an example: https://github.com/MeriamGuellil/ED-NM_CSV for the calculations https://github.com/MeriamGuellil/aDNA-BAMPlotter for the plotting

Thanks! Marcel

Dec 06 '24 10:12 marcel-keller

This indeed would be nice! But we would need a tool packaged on bioconda to add to the pipeline

Dec 06 '24 11:12 jfy133