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DSL2 Metagenomics - Update the test-datasets and input-files for test profiles

Open merszym opened this issue 1 year ago • 0 comments

Problem

We currently use the test-profiles for the metagenomics profilers just as a technical test, that the pipeline runs smootly. But the output is always empty, because the current test-input data (mammoth) and test-databases for the metagenomics profiler tools (bacterial) dont match.

Approach

We should either provide a test-file that has some bacterial reads retained after host-removal or update the test-databases to have some "real" tables produced as output after the end of the respective test-runs.

merszym avatar Sep 06 '24 09:09 merszym