differentialabundance
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Option to disable filtering
Description of feature
I would like an option to disable filtering altogether.
My use-case is that I have data that doesn't fall in the filtering scheme provided by the pipeline, because it is centered, and log-transformed data (Continuous values that can be both negative and positive).
Since it's a bit of a special case, I think it's ok that the pipeline doesn't support filtering for these data, and I prefiltered it myself.
I tried setting filtering_min_abundance to -Inf, but it complains because it's not numeric.
I now set filtertering_min_abundance to an arbitrary, high negative number (like -100000), but that's obviously not a nice solution.
I think a global --enable_filtering flag that defaults to true would be good.
Or, to save parameters, allow setting filtering_min_abundance to null or -Inf.