differentialabundance
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Create subworkflow for deconvolution analyses in bulk data
Description of feature
Celltype deconvolution could be a subworkflow in nf-core and then be imported (with some adjustments) into multiple pipelines, one of them being differentialabundance as something users could turn on / off on demand.
This could encompass:
- [x] #368
- omnideconv (?)
- gene set analysis via GSVA (not sure about overlaps with other functionality here already - but can be discussed with community)
x-ref @christopher-mohr same subworkflow would be interesting for e.g. nanostring.