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Create subworkflow for deconvolution analyses in bulk data

Open apeltzer opened this issue 1 year ago • 0 comments

Description of feature

Celltype deconvolution could be a subworkflow in nf-core and then be imported (with some adjustments) into multiple pipelines, one of them being differentialabundance as something users could turn on / off on demand.

This could encompass:

  • [x] #368
  • omnideconv (?)
  • gene set analysis via GSVA (not sure about overlaps with other functionality here already - but can be discussed with community)

x-ref @christopher-mohr same subworkflow would be interesting for e.g. nanostring.

apeltzer avatar Nov 19 '24 11:11 apeltzer