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Double Check Documentation is current & up2date with latest nf-core standards

Open apeltzer opened this issue 1 year ago • 1 comments

Description of feature

Double Check Documentation is current & up2date with latest nf-core standards, in particular

  • latest template
  • all modules updated
  • use nf-validation for samplesheet and parameters
### Tasks
- [x] Latest template
- [x] All modules updated
- [x] nf-validation for samplesheet and parameters

apeltzer avatar Jul 05 '24 08:07 apeltzer

nf-validation has been replaced by nf-schema. However, nf-schema is currently not supported by the nf-core tooling. Using this new plugin will break the linting and schema builder. Other pipelines are still using the nf-validation plugin (e.g. sarek). In Slack, I was told the migration will most likely occur when the new plugin is fully supported,

atrigila avatar Aug 02 '24 13:08 atrigila