failed to get manifest for: shub://nf-core/deepvariant: the requested manifest was not found in singularity hub

[moldach]

I'm getting an error when trying to pull with singularity (version 3.5.2-1.el7)

singularity pull --name nf-core-deepvariant.simg shub://nf-core/deepvariant

FATAL:   While pulling shub image: failed to get manifest for: shub://nf-core/deepvariant: the requested manifest was not found in singularity hub

[PhilPalmer]

Hi @moldach, sorry for my late reply on this

I think this is the same issue as #13

This is an error in the documentation as Singularity Hub isn't really used by nf-core and so the image cannot be found

Try this instead:

singularity pull --name nf-core-deepvariant.simg docker://nfcore/deepvariant:latest

Hopefully, this will resolve your issue, let me know if not