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Add support for full length circRNA sequence detection

Open nictru opened this issue 10 months ago • 0 comments

Description of feature

Currently, only the BSJs are detected and quantified, without knowing the exact sequences. There are several tools which can obtain the full length circRNA sequence from paired-end data listed below. Unfortunately, none of these tools can process single-end data.

We should then create a parameter for switching between BSJ level and Isoform level discovery.

### Tasks
- [ ] https://github.com/nf-core/circrna/issues/133
- [ ] https://github.com/nf-core/circrna/issues/134
- [ ] https://github.com/nf-core/circrna/issues/135
- [ ] https://github.com/nf-core/circrna/issues/136

nictru avatar Apr 16 '24 08:04 nictru