Genome annotation (gene names) missing in IGV session file

[ktrns]

Hi there,

We noticed that it would be very useful to have the genome annotation already loaded to the IGV session file that is generated by the pipeline. At the moment, this is missing, and it is saved somewhere in the work directory.

Can this perhaps be added in future?

Thank you for your work Katrin

[drpatelh]

Hi @ktrns ! I intentionally left the GTF out from being loaded automatically by IGV because it can take quite a long time to load, especially for the larger genomes. Maybe we can load the gene BED file up instead in the future which should load up quicker 🤔