Jon Palmer
Jon Palmer
Thanks @ksahlin for the great tool. I've been trying to use for a variety of clustering tasks using some amplicon data. I still have some uncertainty on how it is...
I know there are a lot of dependencies with funannotate (it isn't ideal). I spent quite some time getting funannotate working on `conda`. However, as most of you know that...
There is an error when using Augustus that seems to only show up on Mac systems. When training Augustus using BUSCO, BUSCO uses the --proteinprofile option to find a gene...
In my genome annotation software (funannotate) it can parse EggNog annotations data -- this is an optional input that I have in supported the output for several years. I see...
Would it be possible to also get a general model for variant detection using Clair3 for the current "Q-line" R9.4.1 and the HAC_g507 model? Thanks.
Thanks @lmdu for the great tool. I noticed I'm getting a segmentation fault when trying to call the `.composition` function on individual contigs. For comparison `.gc_content` works fine in this...
Thanks for the useful tool! I'm running into the following problem: #### Error 1. Parent features are being suffixed with _0 -- which is breaking parent-child relationships 2. CDS phase...
On Mac, seems to have compiled correctly. But get error on the test data, I don't think it is permissions issue. ``` src/deML -i testData/index.txt -f testData/todemultiplex.fq1.gz -r testData/todemultiplex.fq2.gz -if1...
problem is reformatting the taxonomy information in format needed by UTAX/SINTAX. I've previously looked at SILVA taxonomy -- the taxonomy appeared to be a hot mess (I'm not a bacteriologist).......
In order to get OSX recipes to build on my Mac I have to edit the `conda_build_config.yaml` to add the following: ``` CONDA_BUILD_SYSROOT: - /opt/MacOSX10.9.sdk # [osx] ``` Otherwise all...