neuronflow
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
Are other dockers running on the system, which ports are taken already? Can you show the full output from the hello-world? https://github.com/neuronflow/BraTS-Toolkit/blob/master/0_preprocessing_single.py did you confirm processing of the exam? otherwise...
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
This appears to be the wrong hello world. > What happens if you start the nvidia docker hello-world? https://docs.nvidia.com/datacenter/cloud-native/container-toolkit/install-guide.html
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
Please read the link: https://docs.nvidia.com/datacenter/cloud-native/container-toolkit/install-guide.html Perhaps the hello world is confusing you, please run with and without sudo: ``` sudo docker run --rm --runtime=nvidia --gpus all nvidia/cuda:11.6.2-base-ubuntu20.04 nvidia-smi ``` and...
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
Okay, your docker installation seems to be fine. Which data are you trying to process? What do you see if you type `docker ps` ?
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
What happens if you process the example data?
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
Yes, very likely. I have an alternative t1-c centric preprocessing pipeline that can deal with fewer modalities that we can hopefully publish soon.
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
No worries. Would you be interested in investing time and serving as a beta tester? If so, we can set up a call and discuss :)
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
@Lucas-rbnt still interested? It would be ready for the first tests now.
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
I wrote you on LinkedIn let's coordinate there :)
BraTS-preprocess stuck at "status reveived: { 'code': 201, 'message': 'nifti examination queued!'}."
@Lucas-rbnt please see the post above. Also: > Trying to process private data. Every sample is a *.nii file. `docker ps` returns my greedy_elephant container running can you try with...