neuronflow
Hi @samuelholly, thank you for your interest in BTK and for reporting back. We will look into supporting non-compressed output files.
we should also double check that reading `.nii` files is supported
Sorry, I overlooked your msg @azounek . Did you find a solution int he meantime? Potentially the same issue as here: https://github.com/neuronflow/BraTS-Toolkit/issues/29
Perhaps a good test would be whether HD-BET alone can run on your machines: https://github.com/MIC-DKFZ/HD-BET @FabianIsensee do you have an idea what could be the issue here?
Interesting. We have a new preprocessing pipeline now that might solve your problems. Let me know if you want to serve as a beta tester.
closed until further details about the `cpu` mode are provided.
I have a similar error: ``` Setup failed for custom integration pyscript: Requirements for pyscript not found: ['croniter==1.3.4', 'watchdog==2.1.6']. 10:49:57 PM – (ERROR) setup.py Unable to install package croniter==1.3.4: ERROR:...
when I try to add via GUI: ``` Config flow could not be loaded: Unknown error ```
Any progress? Is there a way to altogether disable the extension for Python files in the worst case? Or just use it for a list of file endings, such as...
Hi, Thanks for your interest in BTK and for reporting the problems here. The HD-BET step should take a few minutes max. > I'm not actually sure what this command...