neurolib

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Todo: enum list of models

2

There should be a way to list all available models. Similar to how TVB handles it would be nice: http://docs.thevirtualbrain.com/_modules/tvb/simulator/models.html

caglorithm

caglorithm

`tqdm` offers a very nice wrapper around for loops for easy progress bars. This could be implemented easily in `Model.integrate_chunkwise()`.

caglorithm

- The file `neurolib/utils/loadData.py` should be called something like `dataset.py` because it only includes that class. - Data loading should be easier. Right now we have `ds = Dataset("gw")` and...

caglorithm

Seed default parameter

2

Corrected the typo in the loadDefaultParameters.py file of the Hopf model. Previously, seed was set to 0 by default, which made the random numbers predictable, and resulted in the same...

lenasal

Optimal control of Wong Wang model

3

- minor changes in model implementation for consistency with other models - full implementation of OC for WW model - test of OC for WW model

lenasal

The example-0-aln-minimal notebook is encountering some kind of error, even when being run through the binder found on the GitHub page. The final plots are not returning the results that...

JacobDuda

Possible deprecation issues in the example file of multimodel_custom_model

1

After making efforts to run the multimodel custom model of Jansen-Rit and thalamus, I have been keeping on receiving errors that are possibly related to deprecation issues. A common issue...

DrCheesenuggets

Parameters provided in examples (and default parameters) does not perform BOLD simulation correctly

1

For some reason I do not understand, the append_outputs parameter in `model.run()` is defaulted to `None` and thus `False` in `model.integrateChunkwise()`. Meanwhile, the bold simulation in `model.simulateBold()` pulls from `self.default_output`....

yusenz

**Summary:** This pull request adds a Jupyter notebook that constructs a lead-field matrix corresponding to the Automated Anatomical Labeling 2 (AAL2) atlas and the standard 1020 electroencephalography (EEG) electrode configuration....

orabe