neuromaps
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netneurolab
A toolbox for comparing brain maps
[BUG] 'Axes3D' object has no attribute '_generate_normals' in neuromaps.plotting.plot_surf_template
### Issue summary --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) [/home/liss/Codes/Python/neuromaps/code/plotall.ipynb](https://file+.vscode-resource.vscode-cdn.net/home/liss/Codes/Python/neuromaps/code/plotall.ipynb) 单元格 8 line 2 19 hemi = None 20 # plot the template ---> 21 fig = plot_surf_template(data=value[j], template=template,...
### Description of issue I want to generate a null model of the schafer200 graph in MNI152 space. I use burt2020 to generate a null model with the code nulls.burt2020...
Trying to do a few things - [x] Remove unused functions in `datasets/_osf.py`, merge the useful ones to `datasets/utils.py` - [x] Add a function in `datasets/_osf.py` for working with adding...
### Description of issue Hello everyone, I have a suggestion regarding brain annotations. It would be helpful if a relevant reference could be included when retrieving an annotation. This will...
### Issue summary (Posting here for traceability) Vertex values of large swathes of cortex appear to not be reassigned in null maps generated by the `neuromaps.nulls.alexander_bloch` method, resulting in abnormal...
Ahoi hoi everyone, thank you very much for your hard and dedicated work on this fantastic resource. I'm currently using `neuromaps` to compare some of the provided maps to maps...
### Description of issue Hi neuromaps team, I am currently working with BrainSMASH to create null maps for both surface and volumetric data and had a look into your code....
For running the primary map comparison workflows (with some light in-memory caching, as needed).
The following line is present in all parcellation-specific null models (i.e., `nulls.vasa`, `nulls.hungarian`, `nulls.baum`, and `nulls.cornblath`): https://github.com/netneurolab/brainnotation/blob/09ef3c88270f85d97de83d69e51cb6917e21f417/brainnotation/nulls/nulls.py#L190 But it should be the _opposite_ (i.e., `if parcellation is None`). Currently all...
### Description of issue Hi team, I'm encountering some issues when transforming fsaverage 164k annotations to fslr 32k. Here I load the flumazenil annotation (in fsaverage 164k), mask out the...
