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I cannot share the data but I will try to give you a dataset with same problem.

Hi! The attached file contains the sciclone results of a primary and relapse pair of samples of this paper http://www.pnas.org/content/113/40/11306 . I've run clonevol like this: ``` library(clonevol) library(fishplot) df...

My experience with Pyclone is that it tends to overestimate the number of clones/clusters in the sample unless you have the type of input data for what Pyclone was designed...

Thanks for the quick reply! I'll give it a try.