neilihrke

ERROR: Failed to run the VEP annotator!

8

perl vcf2maf.pl --input-vcf /path/to/somaticvariants.vcf --output-maf /path/to/out.maf --tumor-id s_MC7562_tumor --normal-id s_MC7562_germline --vep-path /path/to/vep/94/ --vep-data /path/to/vep91/cache/files -tmp-dir /tmp/dir --ncbi-build GRCh38 --ref-fasta /path/to/ref/fastq/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_no_alt_short_headers_nonACTG_to_N.fa --cache-version 91 STATUS: Running VEP and writing to: /output/path/somaticvariants.vep.vcf Can't...

I keep hitting the same issue when trying to start the cluster. $ starcluster start mypipe StarCluster - (http://star.mit.edu/cluster) (v. 0.95.5) Software Tools for Academics and Researchers (STAR) Please submit...