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ENH: Allow /dev/stdin as input alignment arg

Open corneliusroemer opened this issue 2 years ago • 0 comments

To be able to work with compressed alignments, which is useful e.g. for monkeypox, it would be nice if treetime could accept the string /dev/stdin for alignments. Right now, it seems that alignments must be real files (isfile):

https://github.com/neherlab/treetime/blob/23f935fb6be29864c788108d5ab9ab1fccb3823d/treetime/sequence_data.py#L149

corneliusroemer avatar May 16 '23 18:05 corneliusroemer