pan-genome-visualization

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Have run roary-scoary pipelines and now experimenting with pirate. I like the output with the percentages for each of the genes and how pirate provides more complete analysis of when...

drhoads

Running locally with the default data(NPM build issue)

3

I am having problem with the Step 3: Configure the app in the readme.md file. When i am running the npm run build the following problem is occuring. In the...

faraziAnindo

localhost:800/my_species loads, I can view the Gene Cluster but no "Sequence Alignment" and no "Gene Tree"

5

Hello, I had panX some weeks ago and it was working perfectly, but I had to run tun the analysis again to add some new sequences. So with my new,...

NA1919

react-app

1

A complete rewrite of the visualization using React and other tools form the modern web stack. Resolves: https://github.com/neherlab/pan-genome-visualization/issues/6, https://github.com/neherlab/pan-genome-visualization/issues/7, https://github.com/neherlab/pan-genome-visualization/issues/11, https://github.com/neherlab/pan-genome-visualization/issues/15, https://github.com/neherlab/pan-genome-visualization/issues/16 others.

ivan-aksamentov

Non-default dropdown menu

1

It's likely I missed something in the documentation, but how do I get my custom datasets to appear in the dropdown menu? I can navigate manually to the datasets I...

nnoll

Hello, I have added a very simple `Dockerfile` and `docker-compose.yml` based on the [official node.js documentation](https://nodejs.org/en/docs/guides/nodejs-docker-webapp/). - The `Dockerfile` defines the building process (`node:14` base image + `npm install`) and...

simone-pignotti

Hi i am trying to run npm for panX visualization purpose and it giving following error. npm start > [email protected] start /home/neel@m95/Desktop/pan-genome-visualization > node ./bin/www DEPRECATED use https://github.com/pillarjs/path-to-regexp /usr/lib/nodejs/path-to-regexp/index.js:167 return...

neelam19051

Hello, I have run a roary pipeline. I want to use panx to visualize the roary data. How can this be done? Thanks!

EllistonV

Hello, Sorry to bring up this issue again. I know it was already discussed here , however, I still can't seem to get it to work. I did everything as...

pneumowidow