pan-genome-analysis icon indicating copy to clipboard operation
pan-genome-analysis copied to clipboard

Published 20 hours ago • verified publisher icon neherlab

Could this software uesd in animal?

Open ld9866 opened this issue 3 years ago • 2 comments

Hi! I saw from the introduction that this software is designed for use by prokaryotes. We now want to do a simple mammalian diploid for pan-genomics research. I don’t know if your software can achieve good results on animal pan-genomes. Looking forward to hearing from you！

ld9866 avatar Oct 11 '21 06:10 ld9866

I have read the thesis of pan-X published in 2018, it mentioned the comparison between pan-X and other workflows including orthoFinder orthoMCL Roary and panOCT. As far as I know, orthoFinder orthoMCL support the orthologues analysis without the limitation that must analyse with prokaryotes. So I think pan-X also support eukaryotes. But I can't figure out how to use a new species configuration.

wook2014 avatar Mar 17 '22 16:03 wook2014

Thank you! I will test according to your suggestions and contact you if there are any questions. Have a good day!

ld9866 avatar Mar 22 '22 03:03 ld9866