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Published 20 hours ago • verified publisher icon neherlab

Extracting data for individual genomes

Open mdieser opened this issue 5 years ago • 2 comments

Hi - I have analyzed and uploaded 30 bacterial genomes from environmental isolates to the local host/8000. Is there a way to extract all duplication events individual genomes?

Thanks Markus

mdieser avatar Jul 03 '19 15:07 mdieser

I don't think there is a straightforward way to do this. But the geneCluster.json contains a field which for each gene cluster lists all locus_tag/strain combinations that are part of the cluster. you could back out this info from there.

rneher avatar Jul 04 '19 18:07 rneher

I'll try that. Thanks.

mdieser avatar Jul 05 '19 15:07 mdieser