kits21

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meta data in KiTS nii

2

Hello, recently I tried to add some clinical CTs from hosipitals into KiTS. However I noticed KiTS nii fomat shape be like (num_slices, height, width) , which can be described...

nohalloween

Connection Error while running the get_imaging.py file

1

Can someone help me with this. I cloned the repo, ran the get_imaging.py file. initially I want to check the dataset so that is why I only ran for 10...

WallE1602

Removal of Cyst Label from segmentation

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Hi and a very good day, Thank you for organising this challenge and in turn providing the annotated datasets. I have a question here, if I would want to remove...

dannyhow12

total process

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Hi, thanks for your codes; how train and test on some samples? is there any trained model?

bhralzz

kidney class kits19 vs kits21

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Hello, I am trying to understand how to compare (or merge) the datasets of kits19 and kits21. The description of the classes in the kits21 webpage (https://kits21.kits-challenge.org/) says that the...

loressa

python3 kits21/starter_code/get_imaging.py

5

bakry230

RAW annotation

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Can the annotation be used as segmentation classes? you have 3 segmentation clases (Kidneys, tumor,cyst) but you have more annotation in the RAW folder (Arteries,veins,unretires) how can I make use...

kghalieh

I need a CT scan kidney masses; chromophobe and oncocytoma kidney tumors

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Hello, I am working on data collection for my research and I need CT scan images of patients with chromophore renal cell carcinoma and benign renal oncocytoma. Can I get...

abeer2005

increased precision of metrics in csv files, added code for ranking

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## Ranking code increased precision of metrics in csv files to prevent ties as much as possible, added ranking code see ranking.py Also added nnUNet_summary.csv to highlight how the ranking...

FabianIsensee

How to split train and test data?

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I got 300 scans at all, and how can I split them into training and testing sets?

GewelsJI