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increased precision of metrics in csv files, added code for ranking

Open FabianIsensee opened this issue 3 years ago • 1 comments

Ranking code

increased precision of metrics in csv files to prevent ties as much as possible, added ranking code

see ranking.py

Also added nnUNet_summary.csv to highlight how the ranking works. Feel free to ask questions :-)

Checklist

  • [x] Merged latest master
  • [NOPE] Updated version number in README.md
  • [NOPE ] Added changes to changelog.md
  • [NOPE ] Updated version number in setup.py
  • [NOPE] (only when updating dataset) Ran annotation.import to completion
  • [NOPE] (only when updating dataset) Updated Surface Dice tolerances in labels.py (execute sample_segmentations.py, and after that compute_tolerances.py. Then put the new values in. Do not re-use sampled segmentations from prior dataset versions!)

If you want me to increase the version number please let me know

Best, Fabian

FabianIsensee avatar Aug 24 '21 09:08 FabianIsensee

I also updated the docker instructions and added a dockerfile + inference script for the nnunet cascade

FabianIsensee avatar Aug 24 '21 12:08 FabianIsensee