kits21
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increased precision of metrics in csv files, added code for ranking
Ranking code
increased precision of metrics in csv files to prevent ties as much as possible, added ranking code
see ranking.py
Also added nnUNet_summary.csv to highlight how the ranking works. Feel free to ask questions :-)
Checklist
- [x] Merged latest
master
- [NOPE] Updated version number in
README.md
- [NOPE ] Added changes to
changelog.md
- [NOPE ] Updated version number in
setup.py
- [NOPE] (only when updating dataset) Ran
annotation.import
to completion - [NOPE] (only when updating dataset) Updated Surface Dice tolerances in
labels.py
(executesample_segmentations.py
, and after thatcompute_tolerances.py
. Then put the new values in. Do not re-use sampled segmentations from prior dataset versions!)
If you want me to increase the version number please let me know
Best, Fabian
I also updated the docker instructions and added a dockerfile + inference script for the nnunet cascade