Nathan Frey
Nathan Frey
@sgbaird these would all be awesome additions! I wrote a brief [Contribution guide](https://github.com/ncfrey/litmatter/blob/main/CONTRIBUTING.md) for anyone who wants to "Lit" other models and have them included in the repo. I'm focusing...
Hey @kexinhuang12345, I'm a DeepChem dev and I'd be happy to help with this! Let me know if you have any questions about DeepChem, and feel free to tag me...
Hi @M-Borsuk, I'd suggest you try manually featurizing one datapoint from PDBbind with your desired featurizer, which will allow you to debug more easily. `AtomicConvFeaturizer` requires some optional dependencies like...
@M-Borsuk, AtomicConv inherits from `KerasModel`, so if you specify `model_dir` in your model construction, the model will automatically save checkpoints during training. You can then create a new model instance...
@milot-mirdita yes, i installed the latest version (from https://mmseqs.com/latest/mmseqs-linux-avx2.tar.gz ) and see the same error.
@milot-mirdita i've seen that error here: https://github.com/soedinglab/MMseqs2/issues/170 and have checked to make sure there are no spaces after `>`
i'll try the bisecting method, thanks @milot-mirdita ! will report back if i figure it out.
Happy to take a first pass on this as I go through the process of contributing datasets.
@jesperdlau thanks for raising - can you access the file from here: https://github.com/Genentech/walk-jump/tree/main/data ?
@etherealsunshine have you tried this out with MPS?