theHumanBorch

Agreed [deepTCR](https://github.com/sidhomj/DeepTCR) from @sidhomj would be a good addition to the list.

Hey @rana228 Actively working on getting a single integrated object to do this - will update the repo/zenodo when I have gotten it up. An older release is available via...

Hey @huangyan530 I was running into a similar issue on mac. I had clustalw installed and could run it via command line. I ended up reinstalling clustalw using conda, then...

Hey Chris, Thanks for reaching out - my guess is there is a barcode mismatch between the the **singular** and **multiplex** seurat objects vs contig data. I haven't used _aggr_...

@CAC13 Also understandable about data confidentiality, but it will limit the troubleshooting. Thanks for sharing the code - have you thoroughly check the barcodes of the ```combineTCR()``` output vs single-cell...

Struggling to fix the issue without a reproducible example (I have tried a couple of objects beyond the screpertoire test/full objects) - just pushed the commit that @noranekonobokkusu

@Qile0317 I am not convinced this is an issue from scRepertoire side of things. I have tried multiple data sets to reproduce the error and do not find the discrepancy....

Hey thanks for reaching out. > I have a seurat object that ive annotated as specific CD4 subsets. I have the VDJ data for all of the cells that were...

I think what is likely happening here is there is a version issue between scRepertoire v1.8 (built before v5 of Seurat) and the newest Seurat you have installed. They are...

Hey no problem - totally understand. This is a completely new error for me, so bear with me. I see this issue here with the same error message: https://github.com/satijalab/seurat/issues/8297 Is...