Nicholas Bokulich

Varying number of columns in blast6out output file from search

10

I am running the following command: ``` vsearch --usearch_global $query --id 0.9 --query_cov 0.8 --strand 'both' --maxaccepts 1 --maxrejects 32 --db $ref --threads 16 --blast6out $output ``` With the expectation...

add option to constrain axis length

5

see [this](https://forum.qiime2.org/t/generating-multiple-pcoa-plots-of-the-same-size-downloading-plots-as-svg/3887?u=nicholas_bokulich) QIIME2 forum thread It would be very cool to constrain the axis lengths to produce uniform plots. Is there some way to set arbitrary dimensions? Would that make...

if keep_top_samples=False, get an error that "select_microbes is referenced before assignment". Looks like the alternative broke at some point and this line just needs an `else` statement: https://github.com/biocore/mmvec/blob/a520b32d8cf56a1248a142cb332558ca462b1f71/mmvec/heatmap.py#L187-L189 reported in...

Error reported in [QIIME 2 forum](https://forum.qiime2.org/t/error-in-q2-mmvec-and-some-other-question/12562) The issue is at these lines: https://github.com/biocore/mmvec/blob/ec082d25be946971d203d96e77504aaaa3157cfc/mmvec/heatmap.py#L199-L201 This results in a KeyError if any of the features (microbes) are missing from the ranks table....