navis
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navis-org
Python library for analysis of neuroanatomical data.
At present it's annotated to take Dotprops and functions which operate on Dotprops. Synblast doesn't use Dotprops but would benefit from a LookupNdBuilder, and I don't think the builder actually...
`connectors` are currently more-or-less hard-coded into `navis`. In the future we might need to be more flexible for when people want to associate other kinds of meta data with their...
`navis` has grown organically and I have spent only minimal thought on keeping things consistent across functions. For the next major version it would be nice if we could try...
Occasionally I find myself splitting neurons into axon & dendrites and then do the same with connectivity. While this is perfectly possible using Navis, it requires a fair bit of...
`navis.read_swc` will throw very unhelpful `ValueErrors` (via pandas) when the input is a non-existing (file)path (e.g. in case of a typo). Try for example this: ```python _ = navis.read_swc('this/file/does/not/exist.swc') ```...
There are difficulties with installing navis on an M1 mac, with PyQt5 appearing to be the root. Running pip3 install navis in the terminal raiss the following error: error: subprocess-exited-with-error...
Give more of a summary (perhaps split out into separate function) with e.g. cable per index, distributions, etc.
With larger NBLASTs, memory consumption becomes an issue. During the NBLAST each child process holds only the scores it works on in memory. On completion, however, that data has to...
I wondered if there is a way to get an excitatory/inhibitory labeling of synapses through the neuprint interface. I haven't seen information about that labeling yet. Are there any hints...
I followed the instructions from https://navis.readthedocs.io/en/latest/source/tutorials/microns_tut.html and I got the following error when I try to promp the content of the variable "inh". Please could you help me or tell...
