Nate Coraor

Ah thanks for the heads up, looks useful - although that is input-size-to-runtime, but they could certainly be combined.

The whole time I was writing this I was like "I swear I already wrote this," but I looked through the existing queries and didn't see it. Well... #78 :facepalm:

This is better than the other query IMO but needs a bit more work and to integrate the two of them.

This looks like an issue with bioblend?

Yeah this would be good.

@bgruening Would you mind getting a conda list of your `mulled-v1-3ed3a1ca990ccd31d8603d426d444c25343ad90a8f7378000926d72f8a90a339` env?

@jennaj I updated the [April 2016 comment](https://github.com/galaxyproject/galaxy/issues/1470#issuecomment-208442266) to include the missing BWA indexes that I was able to build with the BWT-SW algorithm. Some (like galGal3 and panTro3) with full/canonical...

@jennaj The publishing is finished and Main has been restarted.

My favorite construct: [catch exceptions and silently ignore them](https://github.com/galaxyproject/galaxy/blob/d7921ae4dda5388dfda1f346a6a3b5ca7436a9ee/lib/galaxy/datatypes/util/maf_utilities.py#L300). ```pytb Traceback (most recent call last): File "/home/ndc/maf_utilities.py", line 299, in maf_index_by_uid return bx.align.maf.MultiIndexed(maf_files, keep_open=True, parse_e_rows=False) File "/cvmfs/main.galaxyproject.org/venv/lib/python3.6/site-packages/bx/interval_index_file.py", line 175, in...

I ran the data manager and it appeared to succeed, but I couldn't find the data on Test. It looks like all the DMs we've installed lately are going to...