tombo icon indicating copy to clipboard operation
tombo copied to clipboard

Problem importing Tombo in python

Open MarioRinBarr opened this issue 3 months ago • 1 comments

Hello,

I am trying to use the DENA package, which uses Tombo. However, when importing Tombo ("from tombo import tombo_helper, tombo_stats, resquiggle"; not even when using any of its functions) it totally fails. Does anyone know what could be going on here?

line 21, in from tombo import tombo_helper, tombo_stats, resquiggle File "/home/mario/anaconda3/lib/python3.11/site-packages/tombo/tombo_stats.py", line 84, in HALF_NORM_EXPECTED_VAL = stats.halfnorm.expect() ^^^^^^^^^^^^^^^^^^^^^^^ File "/home/mario/anaconda3/lib/python3.11/site-packages/scipy/stats/_distn_infrastructure.py", line 2914, in expect dub = integrate.quad(fun, d, ub, **kwds)[0] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/mario/anaconda3/lib/python3.11/site-packages/scipy/integrate/_quadpack_py.py", line 465, in quad retval = _quad(func, a, b, args, full_output, epsabs, epsrel, limit, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/mario/anaconda3/lib/python3.11/site-packages/scipy/integrate/_quadpack_py.py", line 579, in _quad return _quadpack._qagie(func,bound,infbounds,args,full_output,epsabs,epsrel,limit) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/mario/anaconda3/lib/python3.11/site-packages/scipy/stats/_distn_infrastructure.py", line 2891, in fun return x * self.pdf(x, *args, **lockwds) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/mario/anaconda3/lib/python3.11/site-packages/scipy/stats/_distn_infrastructure.py", line 1992, in pdf place(output, cond, self._pdf(*goodargs) / scale) ^^^^^^^^^^^^^^^^^^^^ File "/home/mario/anaconda3/lib/python3.11/site-packages/scipy/stats/_continuous_distns.py", line 4253, in _pdf return np.sqrt(2.0/np.pi)np.exp(-xx/2.0) ^^^^^^^^^^^^^^^^ FloatingPointError: underflow encountered in exp

MarioRinBarr avatar Mar 06 '24 12:03 MarioRinBarr