For the stats file, how to count the quantity of each type next

[chenji333]

hello,I just used tombo to calculate 5mC (CHH, CHG) and 6mA, and generated hua_Me.5mC.tombo.stats and hua_Me.6mA.tombo.stats, but I want to count the number of each type and its position on the chromosome and methylation Level , etc. I am not sure how I should proceed next? Is it possible to generate a tsv file or txt file containing this information?

[SycamoreLeaf]

Your best bet is probably the tombo text_output commands.

If that doesn't have what you need, you can probably get it using the Tombo Python API. Instantiate a LevelStats object using the filepath to your .tombo.stats file. I don't know what to do after that; you'll probably have to read some Tombo source.