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Unknown error in resquiggle command
Hi, I am using this command to resquiggle my RNA data:
remora dataset prepare pod5_dir file.bam --output-path mod_chunks --refine-kmer-level-table 5mer_levels_v1.txt --refine-rough-rescale --motif CG 0 --mod-base m 5mC --reverse-signal --overwrite
But, I am getting an error. I am not sure what it is about:
Traceback (most recent call last):
File "/nas/longleaf/home/caroe/.local/bin/remora", line 8, in
I would greatly appreciate your input.
Kind regards,
CA
It looks like the first line of your file 5mer_levels_v1.txt
is empty. Could you check that this file is not empty?
Indeed thanks! It was improperly retrieved! Thank you.