pod5-file-format

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# Added Conda Recipes ## lib-pod5 recipe [Conda package](https://anaconda.org/jannessp/lib-pod5) - used wheel files to build conda package - I think better way would be to use source distributions or to...

JannesSP

tool citation

1

How can I cite `pod5 convert` tool? thanks nic

nicolo-tellini

Question about iteratively getting a read subset

5

Hi pod5 developers, I am trying to do some random access to a POD5 file, a small batch of around 1000 at a time. For instance, say we want to...

hasindu2008

Pyarrow error

10

Hey George, I have a user getting a strange error. I've attached the issue below, where you can also see some more context. Any ideas what the issue here might...

Psy-Fer

Timeout Issue with POD5 conversion

21

Hi, I am trying to convert a FAST5 file to POD5, but the program just hangs and eventually gives a timeout error. This is the command I am running: pod5...

jainronit

pod5 merge hangs indefinitely at 99-100%(the last 20 pod5 have not been merged)

4

## Issue Description > I use pod5 merge to merge my pod5 file, I have 3320 pod5 files. It seemed to have stopped processing the last 20 pods. However, nohup...

kir1to455

When I perform pod5 merge *.pod5 -o merged.pod5 it has an error: POD5 has encountered an error: '1 inputs do not exist: {WindowsPath('*.pod5')}' For detailed information set POD5_DEBUG=1' Following the...

1AoB

pod5 convert fast5 error, currently using python 3.10 and singularity 3.10.4

3

## Attempted to convert one fast5 file to test pod5 functionality on our current system Used standard convertfast5 command and then used the POD5_DEBUG=1 additional to generate additional a log...

hilo1

Error with POD5 filter

2

Dear developers, I'm trying to use pod5 filter but I got this error: ``` pod5 subset test.pod5 -t 1 --summary tes.files --columns barcode --output barcode_subset POD5 has encountered an error:...

lucacozzuto

Sometime between `polars` v0.18 and v0.19 the `comment_char` keyword argument to `pl.read_csv` was depreciated in favor of `comment_prefix`. This PR replaces the two instances of `comment_char` and should resolve [Issue...

JudoWill