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modkit find-motifs won't accept gzipped reference genome

Open granek opened this issue 5 months ago • 1 comments

modkit find-motifs fails if the reference genome is gzipped (see example error message below). This is inconvenient, inconsistent with dorado, which accepts a gzipped reference genome, and not clear from the documentation.

> loading references from "GCF_000840245.1_ViralProj14204_genomic.fna.gz"
> 0 sequences read                                                                                                                                                                                                     
> failed to load 1 record(s)
> Error! failed to read any reference sequences

granek avatar Jul 28 '25 17:07 granek

Hello @granek,

The build available here should. I need to get this into a release very soon.

ArtRand avatar Jul 31 '25 16:07 ArtRand