modkit icon indicating copy to clipboard operation
modkit copied to clipboard

Error during merging bedmethyl files

Open ralanany opened this issue 11 months ago • 1 comments

I am trying to merge two bedmethyl files, each produced from 2 different samples, using this command modkit bedmethyl merge sample_a.bed.gz sample_b.bed.gz > merged.bed

I get this error error: unrecognized subcommand 'bedmethyl'

Usage: modkit <COMMAND>

For more information, try '--help'.

when I used modkit --help I didn't find bedmethyl merge as a subcommand, would you help please?

ralanany avatar Jan 14 '25 14:01 ralanany

Hello @ralanany,

Which version of modkit do you have installed. The bedmethyl merge command was introduced in 0.4.2.

ArtRand avatar Jan 15 '25 23:01 ArtRand