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Ignore multiple mods in adjust-mods

Open Ge0rges opened this issue 1 year ago • 1 comments

Just a convenience feature would be able to do modkit adjust-mods --ignore a,m.

Ge0rges avatar Jul 22 '24 21:07 Ge0rges

Hello @Ge0rges,

That's a good idea (thanks), especially for mods on different primary bases. Right now you'd have to do it through a pipe.

$ modkit adjust-mods ${bam} stdout --ignore m | modkit adjust-mods stdin ${adjusted_bam} --ignore a

ArtRand avatar Jul 23 '24 03:07 ArtRand