medaka
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test suite generates untracked files
Describe the bug
Running make test
creates untracked files in the repository root, which is unexpected.
.coverage
data.pickle
test_hap1.vcf
test_hap2.vcf
test_ref.fasta
Logging
NA
Environment (if you do not have a GPU, write No GPU):
- Installation method: from github source
- OS: Ubuntu 20.04
- medaka version: 1.6.1
- GPU model: No GPU
- Nvidia driver version: 10.1
Additional context
Would it be alright to include .coverage
in .gitignore
?
As far as I can tell, the other files are not needed to run the test suite, and it would be strange if they were needed elsewhere. Would it be alright to remove these?
I can prepare a PR with these changes if you agree.
@mwykes Would be good to track from which tests these are coming and make sure they are being written to a proper tempdir.
I have fixed this on our development branch.