bonito
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toml file and model training
Greetings @iiSeymour !
I am trying to train my own bonito models, and it would be really appreciated if you could provide some insights into the following questions.
- What exactly do "--save-ctc" do? Specifically, what does the yielded "chunks.npy" contain? Maybe normalized event signal levels?
- What do the parameters in the toml file mean, specifically: [input] features [qscore] bias [qscore] scale [encoder] stride [encoder] winlen [encoder] scale [encoder] blank_score [global_norm] state_len
- Can I use different toml config files (different deep learning architectures) when running "bonito basecaller --save-ctc" and "bonito train"?
Thank you very much in advance for your help!