Could I use bonito in the pure CPU computing environment ?

[jjlaisnoopy]

I tried to run bonito in the pure CPU computing environment.

bonito download --models --latest

And part of the error message shown as ImportError: libcuda.so.1: cannot open shared object file: No such file or directory

Could I use bonito in the pure CPU computing environment without GPU driver installed ?

I installed the bonito 0.4.0 with miniconda by following steps:

1. conda create --name bonito python=3.8
2. conda activate bonito
3. git clone https://github.com/nanoporetech/bonito.git
4. cd bonito/
5. pip install -r requirements.txt
6. python setup.py develop

[rsnmsr]

Hi @iiSeymour, I am facing similar issue. I am not able to download any model or training. I am using a pure CPU environment. I performed all the above mentioned steps but still getting errors. I am new to this field, kindly help me.

[dkurt]

Hi! Please try https://github.com/nanoporetech/bonito/pull/52. It was adopted for CPU only environment

[iiSeymour]

Please use dorado for this use-case https://github.com/nanoporetech/dorado