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Published 20 hours ago • verified publisher icon nanoporetech

Issue with the concertation .bam files to .bedpe

Open Oksanak22 opened this issue 2 years ago • 0 comments

Hello.

I got a bunch of bam files from the pipeline. I merged them all together with samtools merge all.bam *.coord_sort.bam and to proceed with the analysis I have to convert all.bam to all.bedpe.

How I can correctly do it because with the bedtools bamtobed i got an empty .bedpe file. I need this kind of file to visualize it in IGV.

Best

Oksanak22 avatar Feb 07 '23 21:02 Oksanak22